TTD_Target_ID Target_Name TTD_Drug_ID Drug_Name Drug_Highest_Status Drug_PubchemID Molecular_Formula Molecular_Weight Canonical_SMILES Activity Binder_Type T05090 Histone deacetylase 3 D0Y3KG Valproate Approved 3121 C8H16O2 144.21 CCCC(CCC)C(=O)O IC50 = 161000 nM Poor binder T05090 Histone deacetylase 3 D0W9NH Tacedinaline Discontinued in Phase 2 2746 C15H15N3O2 269.3 CC(=O)NC1=CC=C(C=C1)C(=O)NC2=CC=CC=C2N IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 B03PZD 2-[(4-Methyl-6-oxo-1H-pyrimidin-2-yl)sulfanyl]-N-(6-phenylhexyl)acetamide Investigative 136025984 C19H25N3O2S 359.5 CC1=CC(=O)NC(=N1)SCC(=O)NCCCCCCC2=CC=CC=C2 IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 B0LZI8 N-Hydroxy-E-3-(4''-methoxybiphenyl-4-yl)-acrylamide Investigative 15986509 C16H15NO3 269.29 COC1=CC=C(C=C1)C2=CC=C(C=C2)/C=C/C(=O)NO IC50 = 84500 nM Poor binder T05090 Histone deacetylase 3 B0R4TM 2-{[2-(4-Tert-butylphenyl)-2-oxoethyl]sulfanyl}-6-methyl-3,4-dihydropyrimidin-4-one Investigative 135497781 C17H20N2O2S 316.4 CC1=CC(=O)NC(=N1)SCC(=O)C2=CC=C(C=C2)C(C)(C)C IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 B13SGM (2E,4E)-5-[4-[3-(1-Adamantyl)-4-methoxyphenyl]phenyl]-N-hydroxypenta-2,4-dienamide Investigative 90654947 C28H31NO3 429.5 COC1=C(C=C(C=C1)C2=CC=C(C=C2)/C=C/C=C/C(=O)NO)C34CC5CC(C3)CC(C5)C4 IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 B1SXO5 N-[4-[2-(4-Methylpyrimidin-2-yl)sulfanylacetyl]phenyl]acetamide Investigative 56659403 C15H15N3O2S 301.4 CC1=NC(=NC=C1)SCC(=O)C2=CC=C(C=C2)NC(=O)C IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 B24FWP 4-[3-[4-Cyano-3-(trifluoromethyl)phenyl]-5,5-dimethyl-4-oxo-2-sulfanylideneimidazolidin-1-yl]-2-fluoro-N-[3-(sulfamoylamino)propyl]benzamide Investigative 134153768 C23H22F4N6O4S2 586.6 CC1(C(=O)N(C(=S)N1C2=CC(=C(C=C2)C(=O)NCCCNS(=O)(=O)N)F)C3=CC(=C(C=C3)C#N)C(F)(F)F)C IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 B2UMF4 N-(2-Amino-5-thiophen-2-ylphenyl)-4-[[[2-(5'-chloro-2'-oxospiro[1,3-dioxane-2,3'-indole]-1'-yl)acetyl]amino]methyl]benzamide Investigative 137648171 C31H27ClN4O5S 603.1 C1COC2(C3=C(C=CC(=C3)Cl)N(C2=O)CC(=O)NCC4=CC=C(C=C4)C(=O)NC5=C(C=CC(=C5)C6=CC=CS6)N)OC1 IC50 = 151800 nM Poor binder T05090 Histone deacetylase 3 B2VLJ6 N-[4-[(4-Methyl-6-oxo-1H-pyrimidin-2-yl)sulfanylmethyl]phenyl]acetamide Investigative 136025842 C14H15N3O2S 289.35 CC1=CC(=O)NC(=N1)SCC2=CC=C(C=C2)NC(=O)C IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 B5H4IM (R)-N-(2-Aminophenyl)-6-((1R,3aS,7aR,E)-4-(2-((3R,5R)-3,5-dihydroxycyclohexylidene)ethylidene)-7a-methyl-octahydro-1H-inden-1-yl)heptanamide Investigative 25207860 C31H46N2O3 494.7 C[C@H](CCCCC(=O)NC1=CC=CC=C1N)[C@H]2CC[C@@H]\\3[C@@]2(CCC/C3=C\\C=C4C[C@H](C[C@@H](C4)O)O)C IC50 = 104000 nM Poor binder T05090 Histone deacetylase 3 B5HIZ3 N-[4-[2-[(4-Methyl-6-oxo-1H-pyridin-2-yl)oxy]acetyl]phenyl]acetamide Investigative 56673261 C16H16N2O4 300.31 CC1=CC(=O)NC(=C1)OCC(=O)C2=CC=C(C=C2)NC(=O)C IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 B6GT3E 4-[3-[4-Cyano-3-(trifluoromethyl)phenyl]-5,5-dimethyl-4-oxo-2-sulfanylideneimidazolidin-1-yl]-2-fluoro-N-[6-(sulfamoylamino)hexyl]benzamide Investigative 134135812 C26H28F4N6O4S2 628.7 CC1(C(=O)N(C(=S)N1C2=CC(=C(C=C2)C(=O)NCCCCCCNS(=O)(=O)N)F)C3=CC(=C(C=C3)C#N)C(F)(F)F)C IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 B6I1JR Schembl21996151 Investigative 134141877 C31H23F4N5O3S 621.6 CC1(C(=O)N(C(=S)N1C2=CC(=C(C=C2)CN3C=CC4=C3C=CC(=C4)/C=C/C(=O)NO)F)C5=CC(=C(C=C5)C#N)C(F)(F)F)C IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 B6K7LT Benzyl (2S)-4-[5-[(2-amino-5-phenylphenyl)carbamoyl]pyridin-2-yl]-2-methylpiperazine-1-carboxylate Investigative 16663079 C31H31N5O3 521.6 C[C@H]1CN(CCN1C(=O)OCC2=CC=CC=C2)C3=NC=C(C=C3)C(=O)NC4=C(C=CC(=C4)C5=CC=CC=C5)N IC50 ~ 50000 nM Poor binder T05090 Histone deacetylase 3 B76NHE 2-[(4-Methyl-6-oxo-1H-pyrimidin-2-yl)sulfanyl]-N-(4-phenylbutyl)acetamide Investigative 136086923 C17H21N3O2S 331.4 CC1=CC(=O)NC(=N1)SCC(=O)NCCCCC2=CC=CC=C2 IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 B7JEZ8 1-((4-Hydroxy-6-methylpyrimidin-2-yl)thio)propan-2-one Investigative 135462117 C8H10N2O2S 198.24 CC1=CC(=O)NC(=N1)SCC(=O)C IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 B81YTQ N-[4-[2-(3-Hydroxyphenyl)sulfanylacetyl]phenyl]acetamide Investigative 56666337 C16H15NO3S 301.4 CC(=O)NC1=CC=C(C=C1)C(=O)CSC2=CC=CC(=C2)O IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 B85BKY 2-Benzyl-N-hydroxy-N'-phenyloctanediamide Investigative 44431499 C21H26N2O3 354.4 C1=CC=C(C=C1)CC(CCCCCC(=O)NC2=CC=CC=C2)C(=O)NO IC50 = 91000 nM Poor binder T05090 Histone deacetylase 3 B93MKY N-[4-[1-Hydroxy-2-[(4-methyl-6-oxo-1H-pyrimidin-2-yl)sulfanyl]ethyl]phenyl]acetamide Investigative 136025843 C15H17N3O3S 319.4 CC1=CC(=O)NC(=N1)SCC(C2=CC=C(C=C2)NC(=O)C)O IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 B9B8NI 4-[3-[4-Cyano-3-(trifluoromethyl)phenyl]-5,5-dimethyl-4-oxo-2-sulfanylideneimidazolidin-1-yl]-2-fluoro-N-[3-(3-hydroxy-2-oxopyridin-1-yl)propyl]benzamide Investigative 134157355 C28H23F4N5O4S 601.6 CC1(C(=O)N(C(=S)N1C2=CC(=C(C=C2)C(=O)NCCCN3C=CC=C(C3=O)O)F)C4=CC(=C(C=C4)C#N)C(F)(F)F)C IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BA2XF9 N-Hydroxy-3-[1-(3-naphthalen-2-ylpropyl)-5-oxo-2H-pyrrol-4-yl]propanamide Investigative 11244651 C20H22N2O3 338.4 C1C=C(C(=O)N1CCCC2=CC3=CC=CC=C3C=C2)CCC(=O)NO IC50 = 80100 nM Poor binder T05090 Histone deacetylase 3 BC05YB E,E-5-(4''-Methoxybiphenyl-4-yl)-penta-2,4-dienoic acid Nhydroxyamide Investigative 42631047 C18H17NO3 295.3 COC1=CC=C(C=C1)C2=CC=C(C=C2)/C=C/C=C/C(=O)NO IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BC52UT 2-Hexyl-N-hydroxy-N'-phenyloctanediamide Investigative 134156853 C20H32N2O3 348.5 CCCCCCC(CCCCCC(=O)NC1=CC=CC=C1)C(=O)NO IC50 = 98000 nM Poor binder T05090 Histone deacetylase 3 BC54SO 2-[2-(2,3-Dihydro-1,4-benzodioxin-6-yl)-2-oxoethyl]sulfanyl-4-methyl-1H-pyrimidin-6-one Investigative 136086920 C15H14N2O4S 318.3 CC1=CC(=O)NC(=N1)SCC(=O)C2=CC3=C(C=C2)OCCO3 IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BDCZ86 2-[(4-Methyl-6-oxo-1,6-dihydropyrimidin-2-yl)sulfanyl]-N-(2-phenylethyl)acetamide Investigative 135441620 C15H17N3O2S 303.4 CC1=CC(=O)NC(=N1)SCC(=O)NCCC2=CC=CC=C2 IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BFC08Z 2-[2-(4-Hydroxyphenyl)-2-oxoethyl]sulfanyl-4-methyl-1H-pyrimidin-6-one Investigative 135928628 C13H12N2O3S 276.31 CC1=CC(=O)NC(=N1)SCC(=O)C2=CC=C(C=C2)O IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BG09QH N-{4-[2-(4,6-Dimethyl-pyrimidin-2-ylsulfanyl)-acetyl]-phenyl}-acetamide Investigative 1108280 C16H17N3O2S 315.4 CC1=CC(=NC(=N1)SCC(=O)C2=CC=C(C=C2)NC(=O)C)C IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BHB09K 2-(2,2-Dimethylpropanoyl)-N-hydroxy-1,3-dihydroisoindole-5-carboxamide Investigative 58147224 C14H18N2O3 262.3 CC(C)(C)C(=O)N1CC2=C(C1)C=C(C=C2)C(=O)NO IC50 ~ 50000 nM Poor binder T05090 Histone deacetylase 3 BHGX52 6-Methyl-2-phenacylsulfanyl-1H-pyrimidin-4-one Investigative 135412194 C13H12N2O2S 260.31 CC1=CC(=O)NC(=N1)SCC(=O)C2=CC=CC=C2 IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BI6ZB1 N-Methyl-N-[4-[2-[(4-methyl-6-oxo-1H-pyrimidin-2-yl)sulfanyl]acetyl]phenyl]acetamide Investigative 136025986 C16H17N3O3S 331.4 CC1=CC(=O)NC(=N1)SCC(=O)C2=CC=C(C=C2)N(C)C(=O)C IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BI92GZ Terephthalamide, 28 Investigative 25218561 C28H29FN4O2 472.6 C1CC2(CCN(CC2)C(=O)C3=CC=C(C=C3)C(=O)NC4=C(C=CC(=C4)C5=CC=CC=C5F)N)NC1 IC50 ~ 50000 nM Poor binder T05090 Histone deacetylase 3 BI97WY N-Hydroxy-2-(1-methylpyrrole-2-carbonyl)-1,3,4,5-tetrahydro-2-benzazepine-7-carboxamide Investigative 58147302 C17H19N3O3 313.35 CN1C=CC=C1C(=O)N2CCCC3=C(C2)C=CC(=C3)C(=O)NO IC50 ~ 50000 nM Poor binder T05090 Histone deacetylase 3 BJ1OD3 2-(Tert-butylcarbonylmethylthio)-4-hydroxy-6-methylpyrimidine Investigative 135473106 C11H16N2O2S 240.32 CC1=CC(=O)NC(=N1)SCC(=O)C(C)(C)C IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BJ2Y3N 2-(4-Chlorophenacylthio)-4-hydroxy-6-methylpyrimidine Investigative 135437514 C13H11ClN2O2S 294.76 CC1=CC(=O)NC(=N1)SCC(=O)C2=CC=C(C=C2)Cl IC50 = 86400 nM Poor binder T05090 Histone deacetylase 3 BKP54S Chembl4218915 Investigative 145970786 C27H24N2O8S 536.6 COC1=CC(=CC(=C1OC)OC)C(=O)C2=CC3=C(C=C2)N(C=C3)S(=O)(=O)C4=CC=CC(=C4)/C=C/C(=O)NO IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BL91AR 3-Ethyl-N-hydroxy-N'-phenyloctanediamide Investigative 54753629 C16H24N2O3 292.37 CCC(CCCCC(=O)NC1=CC=CC=C1)CC(=O)NO IC50 = 97000 nM Poor binder T05090 Histone deacetylase 3 BLBA30 2-[(4-Hydroxy-6-methylpyrimidin-2-yl)sulfanyl]-1-(4-methoxyphenyl)ethanone Investigative 135449197 C14H14N2O3S 290.34 CC1=CC(=O)NC(=N1)SCC(=O)C2=CC=C(C=C2)OC IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BM52VW 2-((S)-2-(2-((S)-2-Amino-3-phenylpropanamido)acetamido)-8-(2-aminophenylamino)-8-oxooctanamido)acetic acid Investigative 45268021 C27H36N6O6 540.6 C1=CC=C(C=C1)C[C@@H](C(=O)NCC(=O)N[C@@H](CCCCCC(=O)NC2=CC=CC=C2N)C(=O)NCC(=O)O)N IC50 = 69300 nM Poor binder T05090 Histone deacetylase 3 BMBC18 N-(2-Amino-5-thiophen-2-ylphenyl)-4-[[(2S)-3-(1H-indol-3-yl)-2-[(4-methoxybenzoyl)amino]propanoyl]amino]benzamide Investigative 137649617 C36H31N5O4S 629.7 COC1=CC=C(C=C1)C(=O)N[C@@H](CC2=CNC3=CC=CC=C32)C(=O)NC4=CC=C(C=C4)C(=O)NC5=C(C=CC(=C5)C6=CC=CS6)N IC50 = 62540 nM Poor binder T05090 Histone deacetylase 3 BMH13O Ethyl 4-((2-amino-5-(thiophen-2-yl)phenyl)carbamoyl)benzylcarbamate Investigative 25155956 C21H21N3O3S 395.5 CCOC(=O)NCC1=CC=C(C=C1)C(=O)NC2=C(C=CC(=C2)C3=CC=CS3)N IC50 ~ 50000 nM Poor binder T05090 Histone deacetylase 3 BN7MF9 Methyl 4-((2-amino-5-(thiophen-2-yl)phenyl)carbamoyl)benzylcarbamate Investigative 44447194 C20H19N3O3S 381.4 COC(=O)NCC1=CC=C(C=C1)C(=O)NC2=C(C=CC(=C2)C3=CC=CS3)N IC50 ~ 50000 nM Poor binder T05090 Histone deacetylase 3 BNJI96 (7R)-N-Hydroxy-7-[(4-pyridin-3-ylpyrimidin-2-yl)amino]-5,6,7,8-tetrahydronaphthalene-2-carboxamide Investigative 92045024 C20H19N5O2 361.4 C1CC2=C(C[C@@H]1NC3=NC=CC(=N3)C4=CN=CC=C4)C=C(C=C2)C(=O)NO IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BO5I0U N-[4-[2-[(4-Methyl-6-oxo-1H-pyrimidin-2-yl)oxy]acetyl]phenyl]acetamide Investigative 136086924 C15H15N3O4 301.3 CC1=CC(=O)NC(=N1)OCC(=O)C2=CC=C(C=C2)NC(=O)C IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BPRY15 Methyl 2-((4-hydroxy-6-methylpyrimidin-2-yl)thio)acetate Investigative 135412048 C8H10N2O3S 214.24 CC1=CC(=O)NC(=N1)SCC(=O)OC IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BR6BY4 N-Hydroxy-2-[(1-methyl-1H-pyrrol-2-yl)carbonyl]isoindoline-5-carboxamide Investigative 58147189 C15H15N3O3 285.3 CN1C=CC=C1C(=O)N2CC3=C(C2)C=C(C=C3)C(=O)NO IC50 ~ 50000 nM Poor binder T05090 Histone deacetylase 3 BRGV98 1-(3,4-Dihydroxyphenyl)-2-[(4-hydroxy-6-methylpyrimidin-2-YL)thio]ethanone Investigative 135444536 C13H12N2O4S 292.31 CC1=CC(=O)NC(=N1)SCC(=O)C2=CC(=C(C=C2)O)O IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BS8PG9 2-(2,2-Dimethylpropanoyl)-N-hydroxy-3,4-dihydro-1H-isoquinoline-6-carboxamide Investigative 49855444 C15H20N2O3 276.33 CC(C)(C)C(=O)N1CCC2=C(C1)C=CC(=C2)C(=O)NO IC50 ~ 50000 nM Poor binder T05090 Histone deacetylase 3 BTA14N (E)-3-[4-[3-(1-Adamantyl)-4-hydroxyphenyl]phenyl]-N-hydroxyprop-2-enamide Investigative 15986417 C25H27NO3 389.5 C1C2CC3CC1CC(C2)(C3)C4=C(C=CC(=C4)C5=CC=C(C=C5)/C=C/C(=O)NO)O IC50 = 55600 nM Poor binder T05090 Histone deacetylase 3 BVSP75 6-[2-[(4-Methyl-6-oxo-1H-pyrimidin-2-yl)sulfanyl]acetyl]-1,3-dihydroindol-2-one Investigative 136086921 C15H13N3O3S 315.3 CC1=CC(=O)NC(=N1)SCC(=O)C2=CC3=C(CC(=O)N3)C=C2 IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BW53QM N-[4-[2-(4-Methoxy-6-methylpyrimidin-2-yl)sulfanylacetyl]phenyl]acetamide Investigative 56673234 C16H17N3O3S 331.4 CC1=CC(=NC(=N1)SCC(=O)C2=CC=C(C=C2)NC(=O)C)OC IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BX62ZD 6-Methyl-2-{[2-oxo-2-(thiophen-2-yl)ethyl]sulfanyl}-3,4-dihydropyrimidin-4-one Investigative 135407493 C11H10N2O2S2 266.3 CC1=CC(=O)NC(=N1)SCC(=O)C2=CC=CS2 IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BX8AF0 N-[4-[2-[(4-Methyl-6-oxo-1H-pyrimidin-2-yl)sulfanyl]acetyl]phenyl]benzamide Investigative 136025837 C20H17N3O3S 379.4 CC1=CC(=O)NC(=N1)SCC(=O)C2=CC=C(C=C2)NC(=O)C3=CC=CC=C3 IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BXW10H Tert-butyl [(2-methylpropan-2-yl)oxycarbonyl-[8-[(2-methylpropan-2-yl)oxycarbonyl-[(2-methylpropan-2-yl)oxycarbonyloxy]amino]-8-oxooctanoyl]amino] carbonate Investigative 127041696 C28H48N2O12 604.7 CC(C)(C)OC(=O)N(C(=O)CCCCCCC(=O)N(C(=O)OC(C)(C)C)OC(=O)OC(C)(C)C)OC(=O)OC(C)(C)C IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 BXWV29 4-[3-[4-Cyano-3-(trifluoromethyl)phenyl]-5,5-dimethyl-4-oxo-2-sulfanylideneimidazolidin-1-yl]-2-fluoro-N-[6-(3-hydroxy-2-oxopyridin-1-yl)hexyl]benzamide Investigative 134142119 C31H29F4N5O4S 643.7 CC1(C(=O)N(C(=S)N1C2=CC(=C(C=C2)C(=O)NCCCCCCN3C=CC=C(C3=O)O)F)C4=CC(=C(C=C4)C#N)C(F)(F)F)C IC50 ~ 100000 nM Poor binder T05090 Histone deacetylase 3 D03QOD N-hydroxy-2,2-diphenylacetamide Investigative 239512 C14H13NO2 227.26 C1=CC=C(C=C1)C(C2=CC=CC=C2)C(=O)NO IC50 ~ 50000 nM Poor binder T05090 Histone deacetylase 3 D07YZZ Octanedioic acid bis-hydroxyamide Investigative 5173 C8H16N2O4 204.22 C(CCCC(=O)NO)CCC(=O)NO IC50 = 62600 nM Poor binder T05090 Histone deacetylase 3 D0E0TA N-(4-hydroxybiphenyl-3-yl)benzamide Investigative 44454650 C19H15NO2 289.3 C1=CC=C(C=C1)C2=CC(=C(C=C2)O)NC(=O)C3=CC=CC=C3 IC50 ~ 50000 nM Poor binder T05090 Histone deacetylase 3 D0Q5MC PCI-34051 Investigative 24753719 C17H16N2O3 296.32 COC1=CC=C(C=C1)CN2C=CC3=C2C=C(C=C3)C(=O)NO IC50 ~ 50000 nM Poor binder