Binding Site Information of Target
Target General Information | Top | ||||
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Target ID | T55781 | Target Info | |||
Target Name | Tyrosine-protein kinase Mer (MERTK) | ||||
Synonyms | Receptor tyrosine kinase MerTK; Proto-oncogene c-Mer | ||||
Target Type | Clinical trial Target | ||||
Gene Name | MERTK | ||||
Biochemical Class | Kinase | ||||
UniProt ID |
Drug Binding Sites of Target | Top | |||||
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Ligand Name: Gilteritinib | Ligand Info | |||||
Structure Description | Crystal structure of MerTK kinase domain in complex with Gilteritinib | PDB:7AB1 | ||||
Method | X-ray diffraction | Resolution | 1.93 Å | Mutation | Yes | [1] |
PDB Sequence |
SHMEELQNKL
577 EDVVIDRNLL587 ILGRILGEGE597 FGSVMEGNLK607 QEDGTSLKVA617 VKTMSQREIE 632 EFLSEAACMK642 DFSHPNVIRL652 LGVCIEMSSQ662 GIPKPMVILP672 FMKYGDLHTY 682 LLYSRLETGP692 RHIPLQTLLR702 FMVDIALGME712 YLSNRNFLHR722 DLAARNCMLR 732 DDMTVCVADF742 PVKWIAIESL772 ADRVYTSKSD782 VWAFGVTMWE792 IATRGMTPYP 802 GVQNHEMYDY812 LLHGHRLKQP822 EDCLDELYEI832 MYSCWRTDPL842 DRPTFSVLRL 852 QLERLLESLP862
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Ligand Name: LY2801653 | Ligand Info | |||||
Structure Description | Crystal structure of MerTK kinase domain in complex with Merestinib | PDB:7AAY | ||||
Method | X-ray diffraction | Resolution | 1.87 Å | Mutation | No | [1] |
PDB Sequence |
SHMEELQNKL
577 EDVVIDRNLL587 ILGKILGEGE597 FGSVMEGNLK607 QEDGTSLKVA617 VKTMKLDNSS 627 QREIEEFLSE637 AACMKDFSHP647 NVIRLLGVCI657 EGIPKPMVIL671 PFMKYGDLHT 681 YLLYSRLETG691 PKHIPLQTLL701 KFMVDIALGM711 EYLSNRNFLH721 RDLAARNCML 731 RDDMTVCVAD741 FGMPVKWIAI769 ESLADRVYTS779 KSDVWAFGVT789 MWEIATRGMT 799 PYPGVQNHEM809 YDYLLHGHRL819 KQPEDCLDEL829 YEIMYSCWRT839 DPLDRPTFSV 849 LRLQLEKLLE859 SLP
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LEU593
4.125
GLY594
3.820
GLU595
3.083
GLY596
4.436
VAL601
3.255
ALA617
3.396
LYS619
2.705
GLU637
3.209
ALA638
4.860
CYS640
3.922
MET641
3.335
PHE644
3.892
VAL649
3.992
ILE650
3.529
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Ligand Name: AZD7762 | Ligand Info | |||||
Structure Description | Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with AZD-7762 | PDB:7CQE | ||||
Method | X-ray diffraction | Resolution | 2.69 Å | Mutation | No | [2] |
PDB Sequence |
EDVVIDRNLL
587 ILGKILGEGG599 SVMEGNLKQE609 DGTSLKVAVK619 TMKREIEEFL635 SEAACMKDFS 645 HPNVIRLLGV655 CIEMIPKPMV669 ILPFMKYGDL679 HTYLLYSRLE689 TGPKHIPLQT 699 LLKFMVDIAL709 GMEYLSNRNF719 LHRDLAARNC729 MLRDDMTVCV739 ADFGPVKWIA 768 IESLADRVYT778 SKSDVWAFGV788 TMWEIATRGM798 TPYPGVQNHE808 MYDYLLHGHR 818 LKQPEDCLDE828 LYEIMYSCWR838 TDPLDRPTFS848 VLRLQLEKLL858 ESL |
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .YDJ or .YDJ2 or .YDJ3 or :3YDJ;style chemicals stick;color identity;select .A:593 or .A:594 or .A:595 or .A:596 or .A:601 or .A:617 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:678 or .A:727 or .A:728 or .A:730 or .A:741; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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Ligand Name: NPS-1034 | Ligand Info | |||||
Structure Description | MerTK kinase domain in complex with NPS-1034 | PDB:7AVX | ||||
Method | X-ray diffraction | Resolution | 2.44 Å | Mutation | No | [3] |
PDB Sequence |
LEDVVIDRNL
586 LILGKILGEG596 EFGSVMEGNL606 KQEDGTSLKV616 AVKTMKLDNS626 SQREIEEFLS 636 EAACMKDFSH646 PNVIRLLGVC656 IEIPKPMVIL671 PFMKYGDLHT681 YLLYSRLETG 691 PKHIPLQTLL701 KFMVDIALGM711 EYLSNRNFLH721 RDLAARNCML731 RDDMTVCVAD 741 FGLSKKIYSG751 DRIAKMPVKW766 IAIESLADRV776 YTSKSDVWAF786 GVTMWEIATR 796 GMTPYPGVQN806 HEMYDYLLHG816 HRLKQPEDCL826 DELYEIMYSC836 WRTDPLDRPT 846 FSVLRLQLEK856 LLESLP
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .S4K or .S4K2 or .S4K3 or :3S4K;style chemicals stick;color identity;select .A:593 or .A:594 or .A:601 or .A:617 or .A:618 or .A:619 or .A:621 or .A:634 or .A:637 or .A:638 or .A:641 or .A:650 or .A:652 or .A:655 or .A:669 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:677 or .A:730 or .A:740 or .A:741 or .A:742 or .A:744; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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LEU593
3.514
GLY594
3.948
VAL601
3.234
ALA617
3.422
VAL618
4.565
LYS619
3.414
MET621
3.367
PHE634
3.073
GLU637
3.516
ALA638
3.546
MET641
3.549
ILE650
3.544
LEU652
4.044
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Ligand Name: adenosine diphosphate | Ligand Info | |||||
Structure Description | Crystal structure of catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with ADP | PDB:3BRB | ||||
Method | X-ray diffraction | Resolution | 1.90 Å | Mutation | No | [4] |
PDB Sequence |
NKLEDVVIDR
584 NLLILGKILG594 EEFGSVMEGN605 LKQEDGTSLK615 VAVKTMNSSQ628 REIEEFLSEA 638 ACMKDFSHPN648 VIRLLGVCIE658 KPMVILPFMK675 YGDLHTYLLY685 SRLETGPKHI 695 PLQTLLKFMV705 DIALGMEYLS715 NRNFLHRDLA725 ARNCMLRDDM735 TVCVADFGLS 745 MPVKWIAIES771 LADRVYTSKS781 DVWAFGVTMW791 EIATRGMTPY801 PGVQNHEMYD 811 YLLHGHRLKQ821 PEDCLDELYE831 IMYSCWRTDP841 LDRPTFSVLR851 LQLEKLLESL 861
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .ADP or .ADP2 or .ADP3 or :3ADP;style chemicals stick;color identity;select .A:593 or .A:594 or .A:601 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:678 or .A:727 or .A:728 or .A:730 or .A:741; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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Ligand Name: AMP-PNP | Ligand Info | |||||
Structure Description | Catalytic Domain of the Proto-oncogene Tyrosine-protein Kinase MER | PDB:2P0C | ||||
Method | X-ray diffraction | Resolution | 2.40 Å | Mutation | No | [4] |
PDB Sequence |
NKLEDVVIDR
584 NLLILGKILG594 EFGSVMEGNL606 KQEDGTSLKV616 AVKTMEFLSE637 AACMKDFSHP 647 NVIRLLGVCI657 PKPMVILPFM674 KYGDLHTYLL684 YSRLETGPKH694 IPLQTLLKFM 704 VDIALGMEYL714 SNRNFLHRDL724 AARNCMLRDD734 MTVCVADFGL744 PVKWIAIESL 772 ADRVYTSKSD782 VWAFGVTMWE792 IATRGMTPYP802 GVQNHEMYDY812 LLHGHRLKQP 822 EDCLDELYEI832 MYSCWRTDPL842 DRPTFSVLRL852 QLEKLLESL
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .ANP or .ANP2 or .ANP3 or :3ANP;style chemicals stick;color identity;select .A:593 or .A:594 or .A:595 or .A:601 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:677 or .A:678 or .A:723 or .A:727 or .A:728 or .A:730 or .A:741; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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Ligand Name: UNC569 | Ligand Info | |||||
Structure Description | Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC569 | PDB:3TCP | ||||
Method | X-ray diffraction | Resolution | 2.69 Å | Mutation | No | [5] |
PDB Sequence |
LEDVVIDRNL
586 LILGKILGSV601 MEGNLKQEDG611 TSLKVAVKTM621 KLDNSSQREI631 EEFLSEAACM 641 KDFSHPNVIR651 LLGVCIEPKP667 MVILPFMKYG677 DLHTYLLYSR687 LETGPKHIPL 697 QTLLKFMVDI707 ALGMEYLSNR717 NFLHRDLAAR727 NCMLRDDMTV737 CVADFPVKWI 767 AIESLADRVY777 TSKSDVWAFG787 VTMWEIATRG797 MTPYPGVQNH807 EMYDYLLHGH 817 RLKQPEDCLD827 ELYEIMYSCW837 RTDPLDRPTF847 SVLRLQLEKL857 LESLPD |
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .CKJ or .CKJ2 or .CKJ3 or :3CKJ;style chemicals stick;color identity;select .A:593 or .A:594 or .A:601 or .A:617 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:678 or .A:727 or .A:728 or .A:730 or .A:740 or .A:741; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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Ligand Name: LDC1267 | Ligand Info | |||||
Structure Description | Crystal structure of MerTK kinase domain in complex with LDC1267 | PDB:7AAX | ||||
Method | X-ray diffraction | Resolution | 1.76 Å | Mutation | Yes | [1] |
PDB Sequence |
GSHMEELQNK
576 LEDVVIDRNL586 LILGRILGEG596 EFGSVMEGNL606 KQEDGTSLKV616 AVKTMSQREI 631 EEFLSEAACM641 KDFSHPNVIR651 LLGVCIEMSS661 QGIPKPMVIL671 PFMKYGDLHT 681 YLLYSRLETG691 PRHIPLQTLL701 RFMVDIALGM711 EYLSNRNFLH721 RDLAARNCML 731 RDDMTVCVAD741 FPVKWIAIES771 LADRVYTSKS781 DVWAFGVTMW791 EIATRGMTPY 801 PGVQNHEMYD811 YLLHGHRLKQ821 PEDCLDELYE831 IMYSCWRTDP841 LDRPTFSVLR 851 LQLERLLESL861 P
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .R6H or .R6H2 or .R6H3 or :3R6H;style chemicals stick;color identity;select .A:593 or .A:594 or .A:601 or .A:617 or .A:618 or .A:619 or .A:634 or .A:637 or .A:638 or .A:641 or .A:650 or .A:652 or .A:669 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:714 or .A:719 or .A:721 or .A:730 or .A:739 or .A:740 or .A:741 or .A:742; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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LEU593
3.789
GLY594
4.540
VAL601
3.437
ALA617
3.428
VAL618
4.395
LYS619
3.363
PHE634
3.134
GLU637
4.009
ALA638
4.200
MET641
3.652
ILE650
3.489
LEU652
3.049
VAL669
3.759
LEU671
3.351
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Ligand Name: UNC2025 | Ligand Info | |||||
Structure Description | Crystal structure of MerTK kinase domain in complex with UNC2025 | PDB:7AB2 | ||||
Method | X-ray diffraction | Resolution | 1.78 Å | Mutation | Yes | [1] |
PDB Sequence |
SHMEELQNKL
577 EDVVIDRNLL587 ILGRILGEGE597 FGSVMEGNLK607 QEDGTSLKVA617 VKTMSQREIE 632 EFLSEAACMK642 DFSHPNVIRL652 LGVCIEMSSQ662 GIPKPMVILP672 FMKYGDLHTY 682 LLYSRLETGP692 RHIPLQTLLR702 FMVDIALGME712 YLSNRNFLHR722 DLAARNCMLR 732 DDMTVCVADF742 PVKWIAIESL772 ADRVYTSKSD782 VWAFGVTMWE792 IATRGMTPYP 802 GVQNHEMYDY812 LLHGHRLKQP822 EDCLDELYEI832 MYSCWRTDPL842 DRPTFSVLRL 852 QLERLLESLP862
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .R6N or .R6N2 or .R6N3 or :3R6N;style chemicals stick;color identity;select .A:593 or .A:601 or .A:617 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:678 or .A:727 or .A:730 or .A:740 or .A:741; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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Ligand Name: (10r)-7-Amino-11-Chloro-12-Fluoro-1-(2-Hydroxyethyl)-3,10,16-Trimethyl-16,17-Dihydro-1h-8,4-(Azeno)pyrazolo[4,3-H][2,5,11]benzoxadiazacyclotetradecin-15(10h)-One | Ligand Info | |||||
Structure Description | Crystal structure of the Mer kinase domain in complex with a macrocyclic inhibitor | PDB:5U6C | ||||
Method | X-ray diffraction | Resolution | 2.10 Å | Mutation | No | [6] |
PDB Sequence |
ELQNKLEDVV
581 IDRNLLILGK591 ILGEGEFGSV601 MEGNLKQEDG611 TSLKVAVKTM621 KLDNSSQREI 631 EEFLSEAACM641 KDFSHPNVMR651 LLGVCIEMIP665 KPMVILPFMK675 YGDLHTYLLY 685 SRLETGPKHI695 PLQTLLKFMV705 DIALGMEYLS715 NRNFLHRDLA725 ARNCMLRDDM 735 TVCVADFGLS745 PVKWIAIESL772 ADRVYTSKSD782 VWAFGVTMWE792 IATRGMTPYP 802 GVQNHEMYDY812 LLHGHRLKQP822 EDCLDELYEI832 MYSCWRTDPL842 DRPTFSVLRL 852 QLEKLLESLP862 DV
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .7YS or .7YS2 or .7YS3 or :37YS;style chemicals stick;color identity;select .A:593 or .A:594 or .A:601 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:677 or .A:678 or .A:681 or .A:727 or .A:728 or .A:729 or .A:730 or .A:740 or .A:741; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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LEU593
3.576
GLY594
4.099
VAL601
3.397
ALA617
3.387
LYS619
4.333
MET650
3.454
LEU671
3.696
PRO672
2.834
PHE673
3.506
MET674
2.968
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Ligand Name: N-(2-{4-[(2s)-4-(Methylsulfonyl)morpholin-2-Yl]-1,3-Thiazol-2-Yl}phenyl)-1h-Imidazole-2-Carboxamide | Ligand Info | |||||
Structure Description | Structure-based optimization of 1H-imidazole-2-carboxamides as Axl kinase inhibitors utilizing a Mer mutant surrogate | PDB:5TC0 | ||||
Method | X-ray diffraction | Resolution | 2.24 Å | Mutation | No | [7] |
PDB Sequence |
EDVVIDRNLL
587 ILGKILGEGE597 FGSVMEGNLK607 QEDGTSLKVA617 VKTMKDFSHP647 NVMRLLGVCI 657 EMSSQGIPKP667 MVILPFMKYG677 DLHTYLLYSR687 LETGPKHIPL697 QTLLKFMVDI 707 ALGMEYLSNR717 NFLHRDLAAR727 NCMLRDDMTV737 CVADFMPVKW766 IAIETSKSDV 783 WAFGVTMWEI793 ATRGMTPYPG803 VQNHEMYDYL813 LHGHRLKQPE823 DCLDELYEIM 833 YSCWRTDPLD843 RPTFSVLRLQ853 LEKLLESL
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .79Y or .79Y2 or .79Y3 or :379Y;style chemicals stick;color identity;select .A:593 or .A:594 or .A:595 or .A:596 or .A:601 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:678 or .A:727 or .A:728 or .A:729 or .A:730 or .A:740 or .A:741; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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LEU593
4.031
GLY594
4.069
GLU595
3.738
GLY596
3.887
VAL601
3.600
ALA617
3.264
LYS619
2.913
MET650
3.386
LEU671
3.477
PRO672
2.964
PHE673
3.625
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Ligand Name: Unk-D-hPhe-bAla(3S-Ph(4-CF3))-NHMe | Ligand Info | |||||
Structure Description | MerTK kinase domain with type 3 inhibitor from a DNA-encoded library | PDB:7AW4 | ||||
Method | X-ray diffraction | Resolution | 1.98 Å | Mutation | No | [3] |
PDB Sequence |
KLEDVVIDRN
585 LLILGKILGE595 GEFGSVMEGN605 LKQEDGTSLK615 VAVKTMKLDN625 SSQREIEEFL 635 SEAACMKDFS645 HPNVIRLLGV655 CIEPKPMVIL671 PFMKYGDLHT681 YLLYSRLETG 691 PKHIPLQTLL701 KFMVDIALGM711 EYLSNRNFLH721 RDLAARNCML731 RDDMTVCVAD 741 FGLSPVKWIA768 IESLADRVYT778 SKSDVWAFGV788 TMWEIATRGM798 TPYPGVQNHE 808 MYDYLLHGHR818 LKQPEDCLDE828 LYEIMYSCWR838 TDPLDRPTFS848 VLRLQLEKLL 858 ESLP
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .S5E or .S5E2 or .S5E3 or :3S5E;style chemicals stick;color identity;select .A:619 or .A:621 or .A:623 or .A:630 or .A:633 or .A:634 or .A:637 or .A:638 or .A:641 or .A:649 or .A:650 or .A:652 or .A:669 or .A:671 or .A:714 or .A:719 or .A:720 or .A:721 or .A:722 or .A:739 or .A:740 or .A:741 or .A:742; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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LYS619
2.922
MET621
3.271
LEU623
3.702
GLU630
3.662
GLU633
3.493
PHE634
3.590
GLU637
2.794
ALA638
3.961
MET641
3.344
VAL649
3.945
ILE650
3.128
LEU652
3.730
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Ligand Name: (7s)-7-Amino-N-[(4-Fluorophenyl)methyl]-8-Oxo-2,9,16,18,21-Pentaazabicyclo[15.3.1]henicosa-1(21),17,19-Triene-20-Carboxamide | Ligand Info | |||||
Structure Description | Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC2541 | PDB:5K0X | ||||
Method | X-ray diffraction | Resolution | 2.23 Å | Mutation | No | [8] |
PDB Sequence |
KLEDVVIDRN
585 LLILGKILGE595 GSVMEGNLKQ608 EDGTSLKVAV618 KTMKLDNSSQ628 IEEFLSEAAC 640 MKDFSHPNVI650 RLLGVCIEPK666 PMVILPFMKY676 GDLHTYLLYS686 RLETGPKHIP 696 LQTLLKFMVD706 IALGMEYLSN716 RNFLHRDLAA726 RNCMLRDDMT736 VCVADFGPVK 765 WIAIESLADR775 VYTSKSDVWA785 FGVTMWEIAT795 RGMTPYPGVQ805 NHEMYDYLLH 815 GHRLKQPEDC825 LDELYEIMYS835 CWRTDPLDRP845 TFSVLRLQLE855 KLLESLPD |
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .K0X or .K0X2 or .K0X3 or :3K0X;style chemicals stick;color identity;select .A:593 or .A:594 or .A:595 or .A:599 or .A:601 or .A:603 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:678 or .A:727 or .A:728 or .A:730 or .A:740 or .A:741; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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LEU593
2.068
GLY594
3.212
GLU595
3.369
GLY599
4.765
VAL601
2.105
GLU603
4.728
ALA617
2.667
LYS619
2.263
ILE650
2.669
LEU671
2.369
PRO672
2.364
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Ligand Name: N-Butyl-2-(Butylamino)-4-[(Trans-4-Hydroxycyclohexyl)amino]-N-Methylpyrimidine-5-Carboxamide | Ligand Info | |||||
Structure Description | Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC1896 | PDB:4MH7 | ||||
Method | X-ray diffraction | Resolution | 2.51 Å | Mutation | No | [9] |
PDB Sequence |
LEDVVIDRNL
586 LILGKILGEG596 EFGSVMEGNL606 KQEDGTSLKV616 AVKTAACMKD643 FSHPNVIRLL 653 GVCIEMSSQG663 IPKPMVILPF673 MKYGDLHTYL683 LYSRLETGPK693 HIPLQTLLKF 703 MVDIALGMEY713 LSNRNFLHRD723 LAARNCMLRD733 DMTVCVADFP763 VKWIAIESLA 773 DRVYTSKSDV783 WAFGVTMWEI793 ATRGMTPYPG803 VQNHEMYDYL813 LHGHRLKQPE 823 DCLDELYEIM833 YSCWRTDPLD843 RPTFSVLRLQ853 LEKLLESL
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .MH7 or .MH72 or .MH73 or :3MH7;style chemicals stick;color identity;select .A:593 or .A:594 or .A:595 or .A:596 or .A:601 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:678 or .A:681 or .A:685 or .A:727 or .A:728 or .A:730 or .A:740 or .A:741; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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LEU593
3.159
GLY594
2.397
GLU595
3.097
GLY596
3.504
VAL601
2.223
ALA617
1.986
LYS619
2.899
ILE650
2.383
LEU671
2.833
PRO672
2.901
PHE673
2.539
MET674
2.288
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Ligand Name: traazacyclotetradecin-8(3H)-one | Ligand Info | |||||
Structure Description | Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC2434 | PDB:5K0K | ||||
Method | X-ray diffraction | Resolution | 2.54 Å | Mutation | No | [10] |
PDB Sequence |
LEDVVIDRNL
586 LILGKILGEG599 SVMEGNLKQE609 DGTSLKVAVK619 TMKLDNSSQR629 EIEEFLSEAA 639 CMKDFSHPNV649 IRLLGVCIEP665 KPMVILPFMK675 YGDLHTYLLY685 SRLETGPKHI 695 PLQTLLKFMV705 DIALGMEYLS715 NRNFLHRDLA725 ARNCMLRDDM735 TVCVADFGLP 763 VKWIAIESLA773 DRVYTSKSDV783 WAFGVTMWEI793 ATRGMTPYPG803 VQNHEMYDYL 813 LHGHRLKQPE823 DCLDELYEIM833 YSCWRTDPLD843 RPTFSVLRLQ853 LEKLLESLPD 863
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .6Q1 or .6Q12 or .6Q13 or :36Q1;style chemicals stick;color identity;select .A:591 or .A:593 or .A:594 or .A:601 or .A:603 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:678 or .A:727 or .A:728 or .A:729 or .A:730 or .A:740 or .A:741; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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LYS591
3.087
LEU593
2.845
GLY594
4.168
VAL601
2.893
GLU603
4.594
ALA617
2.599
LYS619
3.838
ILE650
2.585
LEU671
2.270
PRO672
2.237
PHE673
2.907
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Ligand Name: 2-(Butylamino)-4-[(Trans-4-Hydroxycyclohexyl)amino]-N-(4-Sulfamoylbenzyl)pyrimidine-5-Carboxamide | Ligand Info | |||||
Structure Description | Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC1817 | PDB:4MHA | ||||
Method | X-ray diffraction | Resolution | 2.59 Å | Mutation | No | [9] |
PDB Sequence |
VVIDRNLLIL
589 GKILGEGSVM602 EGNLKQEDGT612 SLKVAVKTMK622 LDNSSQREIE632 EFLSEAACMK 642 DFSHPNVIRL652 LGVCIEPKPM668 VILPFMKYGD678 LHTYLLYSRL688 ETGPKHIPLQ 698 TLLKFMVDIA708 LGMEYLSNRN718 FLHRDLAARN728 CMLRDDMTVC738 VADFGPVKWI 767 AIESLADRVY777 TSKSDVWAFG787 VTMWEIATRG797 MTPYPGVQNH807 EMYDYLLHGH 817 RLKQPEDCLD827 ELYEIMYSCW837 RTDPLDRPTF847 SVLRLQLEKL857 LESLPD |
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .4MH or .4MH2 or .4MH3 or :34MH;style chemicals stick;color identity;select .A:591 or .A:593 or .A:594 or .A:595 or .A:601 or .A:603 or .A:615 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:678 or .A:727 or .A:728 or .A:730 or .A:740 or .A:741; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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LYS591
3.667
LEU593
2.078
GLY594
2.465
GLU595
4.316
VAL601
2.698
GLU603
3.615
LYS615
3.490
ALA617
2.047
LYS619
3.924
ILE650
2.453
LEU671
2.622
PRO672
2.743
|
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Ligand Name: Trans-4-{[2-(Butylamino)-5-(Pyridin-2-Yl)pyrimidin-4-Yl]amino}cyclohexanol | Ligand Info | |||||
Structure Description | Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC1917 | PDB:4M3Q | ||||
Method | X-ray diffraction | Resolution | 2.72 Å | Mutation | No | [11] |
PDB Sequence |
EDVVIDRNLL
587 ILGKILGEGE597 FGSVMEGNLK607 QEDGTSLKVA617 VKTCMKDFSH646 PNVIRLLGVC 656 IEMSSQGIPK666 PMVILPFMKY676 GDLHTYLLYS686 RLETGPKHIP696 LQTLLKFMVD 706 IALGMEYLSN716 RNFLHRDLAA726 RNCMLRDDMT736 VCVADFPVKW766 IAIESLRVYT 778 SKSDVWAFGV788 TMWEIATRGM798 TPYPGVQNHE808 MYDYLLHGHR818 LKQPEDCLDE 828 LYEIMYSCWR838 TDPLDRPTFS848 VLRLQLEKLL858 ESL
|
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .24K or .24K2 or .24K3 or :324K;style chemicals stick;color identity;select .A:593 or .A:594 or .A:595 or .A:596 or .A:601 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:678 or .A:727 or .A:728 or .A:730 or .A:740 or .A:741; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
LEU593
2.525
GLY594
2.332
GLU595
3.158
GLY596
3.653
VAL601
2.240
ALA617
2.254
LYS619
3.939
ILE650
2.904
LEU671
2.542
PRO672
2.371
PHE673
2.966
|
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Ligand Name: 2-(2-Hydroxyethylamino)-6-(3-chloroanilino)-9-isopropylpurine | Ligand Info | |||||
Structure Description | Crystal structure of catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor C52 | PDB:3BPR | ||||
Method | X-ray diffraction | Resolution | 2.80 Å | Mutation | No | [4] |
PDB Sequence |
NKLEDVVIDR
584 NLLILGKILG594 EGEFGSVMEG604 NLKQEDGTSL614 KVAVKTMKRE630 IEEFLSEAAC 640 MKDFSHPNVI650 RLLGVCIEMS660 SPMVILPFMK675 YGDLHTYLLY685 SRLETGPKHI 695 PLQTLLKFMV705 DIALGMEYLS715 NRNFLHRDLA725 ARNCMLRDDM735 TVCVADFGLS 745 PVKWIAIESL772 ADRVYTSKSD782 VWAFGVTMWE792 IATRGMTPYP802 GVQNHEMYDY 812 LLHGHRLKQP822 EDCLDELYEI832 MYSCWRTDPL842 DRPTFSVLRL852 QLEKLLESLP 862 D
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .OLP or .OLP2 or .OLP3 or :3OLP;style chemicals stick;color identity;select .A:593 or .A:601 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:678 or .A:681 or .A:730 or .A:740 or .A:741; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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Ligand Name: 2-(butylamino)-N-[1-(3-fluoropropyl)piperidin-4-yl]-4-{[(1r,4r)-4-hydroxycyclohexyl]amino}pyrimidine-5-carboxamide | Ligand Info | |||||
Structure Description | Crystal Structure of the MerTK Kinase Domain in Complex with Inhibitor MIPS15692 | PDB:7M5Z | ||||
Method | X-ray diffraction | Resolution | 3.06 Å | Mutation | No | [12] |
PDB Sequence |
LEDVVIDRNL
586 LILGRILGEG596 EFGSVMEGNL606 KQEDGTSLKV616 AVKTMNSSQR629 EIEEFLSEAA 639 CMKDFSHPNV649 IRLLGVCIEM659 SSQGIPKPMV669 ILPFMKYGDL679 HTYLLYSRLE 689 TGPRHIPLQT699 LLRFMVDIAL709 GMEYLSNRNF719 LHRDLAARNC729 MLRDDMTVCV 739 ADFPVKWIAI769 ESLADRVYTS779 KSDVWAFGVT789 MWEIATRGMT799 PYPGVQNHEM 809 YDYLLHGHRL819 KQPEDCLDEL829 YEIMYSCWRT839 DPLDRPTFSV849 LRLQLERLLE 859 SLP
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .YR7 or .YR72 or .YR73 or :3YR7;style chemicals stick;color identity;select .A:593 or .A:594 or .A:595 or .A:596 or .A:601 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:678 or .A:727 or .A:730 or .A:740 or .A:741; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
LEU593
3.949
GLY594
3.822
GLU595
4.213
GLY596
4.681
VAL601
3.551
ALA617
3.277
LYS619
3.672
ILE650
3.968
LEU671
3.869
PRO672
3.354
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Ligand Name: 2-(cyclopentyloxy)-9-(2,6-difluorobenzyl)-N-methyl-9H-purin-6-amine | Ligand Info | |||||
Structure Description | MerTK kinase domain in complex with purine inhibitor | PDB:7AW0 | ||||
Method | X-ray diffraction | Resolution | 1.89 Å | Mutation | Yes | [3] |
PDB Sequence |
SHMEELQNKL
577 EDVVIDRNLL587 ILGRILGEGE597 FGSVMEGNLK607 QEDGTSLKVA617 VKTMQREIEE 633 FLSEAACMKD643 FSHPNVIRLL653 GVCIEMSSQG663 IPKPMVILPF673 MKYGDLHTYL 683 LYSRLETGPR693 HIPLQTLLRF703 MVDIALGMEY713 LSNRNFLHRD723 LAARNCMLRD 733 DMTVCVADFP763 VKWIAIESLA773 DRVYTSKSDV783 WAFGVTMWEI793 ATRGMTPYPG 803 VQNHEMYDYL813 LHGHRLKQPE823 DCLDELYEIM833 YSCWRTDPLD843 RPTFSVLRLQ 853 LERLLESLP
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .S4Q or .S4Q2 or .S4Q3 or :3S4Q;style chemicals stick;color identity;select .A:593 or .A:594 or .A:595 or .A:596 or .A:601 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:730 or .A:740 or .A:741; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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Ligand Name: 5-[4-(1,5-dimethylpyrazol-4-yl)-2-methylphenyl]-N-(imidazo[1,2-a]pyridin-6-ylmethyl)-N-methyl-1,3,4-oxadiazol-2-amine | Ligand Info | |||||
Structure Description | MerTK kinase domain with type 1.5 inhibitor containing a di-methyl pyrazole group | PDB:7OLS | ||||
Method | X-ray diffraction | Resolution | 1.89 Å | Mutation | Yes | [13] |
PDB Sequence |
GSHMEELQNK
576 LEDVVIDRNL586 LILGRILGEG596 EFGSVMEGNL606 KQEDGTSLKV616 AVKTMSSQRE 630 IEEFLSEAAC640 MKDFSHPNVI650 RLLGVCIEMS660 SQGIPKPMVI670 LPFMKYGDLH 680 TYLLYSRLET690 GPRHIPLQTL700 LRFMVDIALG710 MEYLSNRNFL720 HRDLAARNCM 730 LRDDMTVCVA740 DFGPVKWIAI769 ESLADRVYTS779 KSDVWAFGVT789 MWEIATRGMT 799 PYPGVQNHEM809 YDYLLHGHRL819 KQPEDCLDEL829 YEIMYSCWRT839 DPLDRPTFSV 849 LRLQLERLLE859 SLP
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .VJZ or .VJZ2 or .VJZ3 or :3VJZ;style chemicals stick;color identity;select .A:593 or .A:601 or .A:617 or .A:619 or .A:621 or .A:634 or .A:637 or .A:638 or .A:641 or .A:650 or .A:652 or .A:655 or .A:669 or .A:671 or .A:672 or .A:673 or .A:674 or .A:730 or .A:740 or .A:741 or .A:742; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
LEU593
4.459
VAL601
3.811
ALA617
3.547
LYS619
4.098
MET621
4.530
PHE634
3.153
GLU637
3.690
ALA638
3.505
MET641
3.651
ILE650
3.747
LEU652
3.894
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Ligand Name: N-[6-[4-[[4-(6,8-dihydro-5H-imidazo[1,2-a]pyrazin-7-ylmethyl)-3-(trifluoromethyl)phenyl]carbamoylamino]phenoxy]pyrimidin-4-yl]cyclopropanecarboxamide | Ligand Info | |||||
Structure Description | MerTK kinase domain in complex with a type 2 inhibitor | PDB:7AW1 | ||||
Method | X-ray diffraction | Resolution | 1.98 Å | Mutation | Yes | [3] |
PDB Sequence |
SHMEELQNKL
577 EDVVIDRNLL587 ILGRILGEGE597 FGSVMEGNLK607 QEDGTSLKVA617 VKTMSQREIE 632 EFLSEAACMK642 DFSHPNVIRL652 LGVCIEMSSI664 PKPMVILPFM674 KYGDLHTYLL 684 YSRLETGPRH694 IPLQTLLRFM704 VDIALGMEYL714 SNRNFLHRDL724 AARNCMLRDD 734 MTVCVADFPV764 KWIAIESLAD774 RVYTSKSDVW784 AFGVTMWEIA794 TRGMTPYPGV 804 QNHEMYDYLL814 HGHRLKQPED824 CLDELYEIMY834 SCWRTDPLDR844 PTFSVLRLQL 854 ERLLESLP
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .S4T or .S4T2 or .S4T3 or :3S4T;style chemicals stick;color identity;select .A:593 or .A:601 or .A:617 or .A:619 or .A:637 or .A:641 or .A:644 or .A:649 or .A:650 or .A:669 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:714 or .A:719 or .A:720 or .A:721 or .A:722 or .A:730 or .A:739 or .A:740 or .A:741 or .A:742; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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LEU593
4.220
VAL601
3.814
ALA617
3.405
LYS619
3.760
GLU637
3.234
MET641
3.578
PHE644
3.557
VAL649
4.388
ILE650
3.599
VAL669
4.579
LEU671
3.287
PRO672
3.282
PHE673
3.743
MET674
2.949
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Ligand Name: N-[[3-[4-[(dimethylamino)methyl]phenyl]imidazo[1,2-a]pyridin-6-yl]methyl]-N-methyl-5-[3-methyl-5-(1,3,5-trimethylpyrazol-4-yl)pyridin-2-yl]-1,3,4-oxadiazol-2-amine | Ligand Info | |||||
Structure Description | MerTK kinase domain with type 1.5 inhibitor containing a tri-methyl pyrazole group | PDB:7OLX | ||||
Method | X-ray diffraction | Resolution | 1.98 Å | Mutation | Yes | [13] |
PDB Sequence |
GSHMEELQNK
576 LEDVVIDRNL586 LILGRILGEG596 EFGSVMEGNL606 KQEDGTSLKV616 AVKTMKNSSQ 628 REIEEFLSEA638 ACMKDFSHPN648 VIRLLGVCIE658 MSSQGIPKPM668 VILPFMKYGD 678 LHTYLLYSRL688 ETGPRHIPLQ698 TLLRFMVDIA708 LGMEYLSNRN718 FLHRDLAARN 728 CMLRDDMTVC738 VADFGPVKWI767 AIESLADRVY777 TSKSDVWAFG787 VTMWEIATRG 797 MTPYPGVQNH807 EMYDYLLHGH817 RLKQPEDCLD827 ELYEIMYSCW837 RTDPLDRPTF 847 SVLRLQLERL857 LESLP
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .VK5 or .VK52 or .VK53 or :3VK5;style chemicals stick;color identity;select .A:593 or .A:594 or .A:601 or .A:617 or .A:619 or .A:621 or .A:634 or .A:637 or .A:638 or .A:641 or .A:650 or .A:652 or .A:655 or .A:669 or .A:671 or .A:672 or .A:673 or .A:674 or .A:677 or .A:678 or .A:681 or .A:730 or .A:740 or .A:741 or .A:742 or .A:743; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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LEU593
3.672
GLY594
4.338
VAL601
3.762
ALA617
3.604
LYS619
3.201
MET621
3.782
PHE634
3.113
GLU637
3.725
ALA638
3.575
MET641
3.447
ILE650
3.649
LEU652
3.871
VAL655
4.550
|
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Ligand Name: 2-[1-[[(5-chloro-1H-pyrrolo[2,3-b]pyridine-3-carbonyl)amino]methyl]-2-azabicyclo[2.1.1]hexan-2-yl]-N-methyl-4-(trifluoromethyl)-1,3-thiazole-5-carboxamide | Ligand Info | |||||
Structure Description | MerTK kinase domain with type 1 inhibitor from a DNA-encoded library | PDB:7AW3 | ||||
Method | X-ray diffraction | Resolution | 1.99 Å | Mutation | Yes | [3] |
PDB Sequence |
SHMEELQNKL
577 EDVVIDRNLL587 ILGRILGEGE597 FGSVMEGNLK607 QEDGTSLKVA617 VKTMQREIEE 633 FLSEAACMKD643 FSHPNVIRLL653 GVCIEMSSQG663 IPKPMVILPF673 MKYGDLHTYL 683 LYSRLETGPR693 HIPLQTLLRF703 MVDIALGMEY713 LSNRNFLHRD723 LAARNCMLRD 733 DMTVCVADFP763 VKWIAIESLA773 DRVYTSKSDV783 WAFGVTMWEI793 ATRGMTPYPG 803 VQNHEMYDYL813 LHGHRLKQPE823 DCLDELYEIM833 YSCWRTDPLD843 RPTFSVLRLQ 853 LERLLESLP
|
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .S4Z or .S4Z2 or .S4Z3 or :3S4Z;style chemicals stick;color identity;select .A:593 or .A:594 or .A:595 or .A:601 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:677 or .A:678 or .A:681 or .A:727 or .A:728 or .A:730 or .A:740 or .A:741; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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Ligand Name: 2-N-[4-(cyclopropylmethoxy)-3,5-difluorophenyl]-5-[(3R)-3-methylpiperazin-1-yl]-4-N-(oxan-4-yl)pyrimidine-2,4-diamine | Ligand Info | |||||
Structure Description | MerTK kinase domain in complex with a bisaminopyrimidine inhibitor | PDB:7AVZ | ||||
Method | X-ray diffraction | Resolution | 2.04 Å | Mutation | Yes | [3] |
PDB Sequence |
SHMEELQNKL
577 EDVVIDRNLL587 ILGRILGEGE597 FGSVMEGNLK607 QEDGTSLKVA617 VKTMSQREIE 632 EFLSEAACMK642 DFSHPNVIRL652 LGVCIEMSSI664 PKPMVILPFM674 KYGDLHTYLL 684 YSRLETGPRH694 IPLQTLLRFM704 VDIALGMEYL714 SNRNFLHRDL724 AARNCMLRDD 734 MTVCVADFPV764 KWIAIESLAD774 RVYTSKSDVW784 AFGVTMWEIA794 TRGMTPYPGV 804 QNHEMYDYLL814 HGHRLKQPED824 CLDELYEIMY834 SCWRTDPLDR844 PTFSVLRLQL 854 ERLLESLP
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .S4N or .S4N2 or .S4N3 or :3S4N;style chemicals stick;color identity;select .A:593 or .A:594 or .A:601 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:678 or .A:727 or .A:728 or .A:729 or .A:730 or .A:740 or .A:741; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
LEU593
3.774
GLY594
4.694
VAL601
3.495
ALA617
3.246
LYS619
4.104
ILE650
3.320
LEU671
3.404
PRO672
3.068
PHE673
3.627
MET674
2.815
|
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Ligand Name: 5-[4-(2-chlorophenyl)phenyl]-N-(imidazo[1,2-a]pyridin-6-ylmethyl)-N-methyl-1,3,4-oxadiazol-2-amine | Ligand Info | |||||
Structure Description | MerTK kinase domain with type 1.5 inhibitor from a DNA-encoded library | PDB:7AW2 | ||||
Method | X-ray diffraction | Resolution | 2.10 Å | Mutation | Yes | [3] |
PDB Sequence |
SHMEELQNKL
577 EDVVIDRNLL587 ILGRILGEFG599 SVMEGNLKQE609 DGTSLKVAVK619 TMKNSSQREI 631 EEFLSEAACM641 KDFSHPNVIR651 LLGVCIEMSS661 PKPMVILPFM674 KYGDLHTYLL 684 YSRLETGPRH694 IPLQTLLRFM704 VDIALGMEYL714 SNRNFLHRDL724 AARNCMLRDD 734 MTVCVADFGL744 PVKWIAIESL772 ADRVYTSKSD782 VWAFGVTMWE792 IATRGMTPYP 802 GVQNHEMYDY812 LLHGHRLKQP822 EDCLDELYEI832 MYSCWRTDPL842 DRPTFSVLRL 852 QLERLLESLP862
|
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .S4W or .S4W2 or .S4W3 or :3S4W;style chemicals stick;color identity;select .A:593 or .A:601 or .A:617 or .A:619 or .A:621 or .A:634 or .A:637 or .A:638 or .A:641 or .A:650 or .A:652 or .A:655 or .A:669 or .A:671 or .A:672 or .A:673 or .A:674 or .A:730 or .A:740 or .A:741 or .A:742 or .A:744; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
LEU593
4.241
VAL601
3.917
ALA617
3.422
LYS619
4.023
MET621
3.672
PHE634
3.822
GLU637
3.494
ALA638
3.798
MET641
3.458
ILE650
3.743
LEU652
3.605
|
|||||
Ligand Name: 4-[4-[5-[Imidazo[1,2-a]pyridin-6-ylmethyl(methyl)amino]-1,3,4-oxadiazol-2-yl]-3-methylphenyl]-2,5-dimethylpyrazole-3-carbonitrile | Ligand Info | |||||
Structure Description | MerTK kinase domain with type 1.5 inhibitor containing a di-methyl, cyano pyrazole group | PDB:7OLV | ||||
Method | X-ray diffraction | Resolution | 2.13 Å | Mutation | Yes | [13] |
PDB Sequence |
GSHMEELQNK
576 LEDVVIDRNL586 LILGRILGEG596 EFGSVMEGNL606 KQEDGTSLKV616 AVKTMSSQRE 630 IEEFLSEAAC640 MKDFSHPNVI650 RLLGVCIEMS660 SQGIPKPMVI670 LPFMKYGDLH 680 TYLLYSRLET690 GPRHIPLQTL700 LRFMVDIALG710 MEYLSNRNFL720 HRDLAARNCM 730 LRDDMTVCVA740 DFGPVKWIAI769 ESLADRVYTS779 KSDVWAFGVT789 MWEIATRGMT 799 PYPGVQNHEM809 YDYLLHGHRL819 KQPEDCLDEL829 YEIMYSCWRT839 DPLDRPTFSV 849 LRLQLERLLE859 SLP
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .VK2 or .VK22 or .VK23 or :3VK2;style chemicals stick;color identity;select .A:593 or .A:601 or .A:617 or .A:619 or .A:621 or .A:634 or .A:637 or .A:638 or .A:641 or .A:650 or .A:652 or .A:655 or .A:669 or .A:671 or .A:672 or .A:673 or .A:674 or .A:730 or .A:740 or .A:741 or .A:742 or .A:743; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
LEU593
4.575
VAL601
3.740
ALA617
3.457
LYS619
4.223
MET621
4.112
PHE634
3.160
GLU637
3.569
ALA638
3.318
MET641
3.607
ILE650
3.814
LEU652
3.252
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Ligand Name: 2-azanyl-~{N}-[(1~{S},2~{S})-2-[[4-[4-[(4-methylpiperazin-1-yl)methyl]phenyl]phenyl]methoxy]cyclopentyl]-5-(1-methylpyrazol-4-yl)pyridine-3-carboxamide | Ligand Info | |||||
Structure Description | Crystal structure of MerTK in complex with a type 1.5 aminopyridine inhibitor | PDB:7AAZ | ||||
Method | X-ray diffraction | Resolution | 1.85 Å | Mutation | No | [1] |
PDB Sequence |
QNKLEDVVID
583 RNLLILGKIL593 GEGEFGSVME603 GNLKQEDGTS613 LKVAVKTMKL623 DNSSQREIEE 633 FLSEAACMKD643 FSHPNVIRLL653 GVCIEMSSQG663 IPKPMVILPF673 MKYGDLHTYL 683 LYSRLETGPK693 HIPLQTLLKF703 MVDIALGMEY713 LSNRNFLHRD723 LAARNCMLRD 733 DMTVCVADFG743 LSKKIYSGDY753 YRQGRIAKMP763 VKWIAIESLA773 DRVYTSKSDV 783 WAFGVTMWEI793 ATRGMTPYPG803 VQNHEMYDYL813 LHGHRLKQPE823 DCLDELYEIM 833 YSCWRTDPLD843 RPTFSVLRLQ853 LEKLLESLPD863
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .R6K or .R6K2 or .R6K3 or :3R6K;style chemicals stick;color identity;select .A:593 or .A:601 or .A:617 or .A:619 or .A:621 or .A:634 or .A:637 or .A:638 or .A:641 or .A:650 or .A:652 or .A:669 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:727 or .A:728 or .A:730 or .A:740 or .A:741 or .A:742 or .A:743 or .A:744 or .A:745 or .A:746 or .A:753 or .A:754; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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LEU593
3.687
VAL601
3.777
ALA617
3.351
LYS619
3.645
MET621
3.609
PHE634
3.611
GLU637
2.558
ALA638
4.534
MET641
3.472
ILE650
3.973
LEU652
3.867
VAL669
3.958
LEU671
3.413
PRO672
2.993
PHE673
3.649
MET674
2.756
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Ligand Name: N-(2-(2-cyclopropylethoxy)pyrimidin-5-yl)-7-methoxy-6-(piperidin-4-ylmethoxy)quinazolin-4-amine | Ligand Info | |||||
Structure Description | MerTK kinase domain in complex with quinazoline-based inhbitor | PDB:7AVY | ||||
Method | X-ray diffraction | Resolution | 2.31 Å | Mutation | No | [3] |
PDB Sequence |
KLEDVVIDRN
585 LLILGKILGE595 GEFGSVMEGN605 LKQDGTSLKV616 AVKTMKLDNS626 SQREIEEFLS 636 EAACMKDFSH646 PNVIRLLGVC656 IEMSSQGIPK666 PMVILPFMKY676 GDLHTYLLYS 686 RLETGPKHIP696 LQTLLKFMVD706 IALGMEYLSN716 RNFLHRDLAA726 RNCMLRDDMT 736 VCVADFGLSP763 VKWIAIESLA773 DRVYTSKSDV783 WAFGVTMWEI793 ATRGMTPYPG 803 VQNHEMYDYL813 LHGHRLKQPE823 DCLDELYEIM833 YSCWRTDPLD843 RPTFSVLRLQ 853 LEKLLESLPD863
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .S4E or .S4E2 or .S4E3 or :3S4E;style chemicals stick;color identity;select .A:593 or .A:594 or .A:601 or .A:617 or .A:619 or .A:621 or .A:641 or .A:650 or .A:669 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:677 or .A:678 or .A:681 or .A:730 or .A:740 or .A:741 or .A:742 or .A:744; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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LEU593
3.401
GLY594
3.920
VAL601
3.954
ALA617
3.232
LYS619
3.757
MET621
4.375
MET641
4.338
ILE650
3.968
VAL669
4.126
LEU671
3.480
PRO672
3.360
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Ligand Name: 3-[4-[6-chloranyl-5-[[(3R)-pyrrolidin-3-yl]amino]-1H-indazol-3-yl]pyrazol-1-yl]benzenecarbonitrile | Ligand Info | |||||
Structure Description | Fragment-based Lead Discovery of Indazole-based Compounds as AXL Kinase Inhibitors | PDB:7DXL | ||||
Method | X-ray diffraction | Resolution | 3.15 Å | Mutation | Yes | [14] |
PDB Sequence |
NKLEDVVIDR
584 NLLILGKILG594 EGEFGSVMEG604 NLKQEDGTSL614 KVAVKTMSSQ628 REIEEFLSEA 638 ACMKDFSHPN648 VMRLLGVCIE658 KPMVILPFMK675 YGDLHTYLLY685 SRLETGPKHI 695 PLQTLLKFMV705 DIALGMEYLS715 NRNFLHRDLA725 ARNCMLRDDM735 TVCVADFGLM 762 PVKWIAIESL772 ADRVYTSKSD782 VWAFGVTMWE792 IATRGMTPYP802 GVQNHEMYDY 812 LLHGHRLKQP822 EDCLDELYEI832 MYSCWRTDPL842 DRPTFSVLRL852 QLEKLLESLP 862 D
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .E56 or .E562 or .E563 or :3E56;style chemicals stick;color identity;select .A:593 or .A:601 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:727 or .A:728 or .A:730 or .A:740 or .A:741; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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Ligand Name: N-[2-{4-[(2s)-4-(Methylsulfonyl)morpholin-2-Yl]-1,3-Thiazol-2-Yl}-4-(Morpholin-4-Yl)phenyl]-1h-Imidazole-2-Carboxamide | Ligand Info | |||||
Structure Description | Structure-based optimization of 1H-imidazole-2-carboxamides as Axl kinase inhibitors utilizing a Mer mutant surrogate | PDB:5TD2 | ||||
Method | X-ray diffraction | Resolution | 2.68 Å | Mutation | No | [7] |
PDB Sequence |
LEDVVIDRNL
586 LILGKILGEG596 EFGSVMEGNL606 KQEDGTSLKV616 AVKTMAACMK642 DFSHPNVMRL 652 LGVCIEMSSP667 MVILPFMKYG677 DLHTYLLYSR687 LETGPKHIPL697 QTLLKFMVDI 707 ALGMEYLSNR717 NFLHRDLAAR727 NCMLRDDMTV737 CVADFPVKWI767 AIESLYTSKS 781 DVWAFGVTMW791 EIATRGMTPY801 PGVQNHEMYD811 YLLHGHRLKQ821 PEDCLDELYE 831 IMYSCWRTDP841 LDRPTFSVLR851 LQLEKLLESL861
|
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .7AE or .7AE2 or .7AE3 or :37AE;style chemicals stick;color identity;select .A:593 or .A:594 or .A:595 or .A:596 or .A:601 or .A:617 or .A:619 or .A:650 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:678 or .A:727 or .A:728 or .A:729 or .A:730 or .A:740 or .A:741; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
LEU593
3.878
GLY594
4.210
GLU595
3.594
GLY596
3.596
VAL601
3.759
ALA617
3.346
LYS619
3.114
MET650
3.401
LEU671
3.458
PRO672
3.031
PHE673
3.644
|
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Ligand Name: cis-4-[(2-[(4-{[4-(1,3-dioxolan-2-yl)pyridin-2-yl]ethynyl}phenyl)amino]-5-{4-[(4-methylpiperazin-1-yl)methyl]phenyl}pyrimidin-4-yl)amino]cyclohexan-1-ol | Ligand Info | |||||
Structure Description | Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC3437 | PDB:6MEP | ||||
Method | X-ray diffraction | Resolution | 2.89 Å | Mutation | No | [15] |
PDB Sequence |
KLEDVVIDRN
585 LLILGKILGE595 GEFGSVMEGN605 LKQEDGTSLK615 VAVKTEFLSE637 AACMKDFSHP 647 NVIRLLGVCI657 PMVILPFMKY676 GDLHTYLLYS686 RLETGPKHIP696 LQTLLKFMVD 706 IALGMEYLSN716 RNFLHRDLAA726 RNCMLRDDMT736 VCVADFGLSP763 VKWIAIESLA 773 DRVYTSKSDV783 WAFGVTMWEI793 ATRGMTPYPG803 VQNHEMYDYL813 LHGHRLKQPE 823 DCLDELYEIM833 YSCWRTDPLD843 RPTFSVLRLQ853 LEKLLESLPD863 |
|||||
Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .9VS or .9VS2 or .9VS3 or :39VS;style chemicals stick;color identity;select .A:591 or .A:593 or .A:594 or .A:595 or .A:601 or .A:603 or .A:617 or .A:619 or .A:641 or .A:644 or .A:649 or .A:650 or .A:651 or .A:652 or .A:669 or .A:671 or .A:672 or .A:673 or .A:674 or .A:675 or .A:676 or .A:677 or .A:678 or .A:681 or .A:727 or .A:730 or .A:740 or .A:741 or .A:742 or .A:743 or .A:744; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
|
LYS591
2.254
LEU593
2.035
GLY594
3.556
GLU595
4.185
VAL601
2.967
GLU603
4.920
ALA617
3.161
LYS619
2.088
MET641
2.528
PHE644
4.149
VAL649
4.651
ILE650
2.511
ARG651
4.394
LEU652
1.881
VAL669
3.449
LEU671
1.995
|
References | Top | ||||
---|---|---|---|---|---|
REF 1 | A-loop interactions in Mer tyrosine kinase give rise to inhibitors with two-step mechanism and long residence time of binding. Biochem J. 2020 Nov 27;477(22):4443-4452. | ||||
REF 2 | Crystal Structure of the Kinase Domain of MerTK in Complex with AZD7762 Provides Clues for Structure-Based Drug Development. Int J Mol Sci. 2020 Oct 23;21(21):7878. | ||||
REF 3 | Generating Selective Leads for Mer Kinase Inhibitors-Example of a Comprehensive Lead-Generation Strategy. J Med Chem. 2021 Mar 25;64(6):3165-3184. | ||||
REF 4 | Structural insights into the inhibited states of the Mer receptor tyrosine kinase. J Struct Biol. 2009 Feb;165(2):88-96. | ||||
REF 5 | Discovery of Novel Small Molecule Mer Kinase Inhibitors for the Treatment of Pediatric Acute Lymphoblastic Leukemia. ACS Med Chem Lett. 2012 Feb 9;3(2):129-134. | ||||
REF 6 | The Axl kinase domain in complex with a macrocyclic inhibitor offers first structural insights into an active TAM receptor kinase. J Biol Chem. 2017 Sep 22;292(38):15705-15716. | ||||
REF 7 | Structure-based optimization of 1H-imidazole-2-carboxamides as Axl kinase inhibitors utilizing a Mer mutant surrogate. Bioorg Med Chem Lett. 2017 Feb 15;27(4):1099-1104. | ||||
REF 8 | Discovery of Macrocyclic Pyrimidines as MerTK-Specific Inhibitors. ChemMedChem. 2017 Feb 3;12(3):207-213. | ||||
REF 9 | Discovery of Mer specific tyrosine kinase inhibitors for the treatment and prevention of thrombosis. J Med Chem. 2013 Dec 12;56(23):9693-700. | ||||
REF 10 | Design and Synthesis of Novel Macrocyclic Mer Tyrosine Kinase Inhibitors. ACS Med Chem Lett. 2016 Sep 13;7(12):1044-1049. | ||||
REF 11 | Pseudo-cyclization through intramolecular hydrogen bond enables discovery of pyridine substituted pyrimidines as new Mer kinase inhibitors. J Med Chem. 2013 Dec 12;56(23):9683-92. | ||||
REF 12 | Development of [(18)F]MIPS15692, a radiotracer with in?vitro proof-of-concept for the imaging of MER tyrosine kinase (MERTK) in neuroinflammatory disease. Eur J Med Chem. 2021 Dec 15;226:113822. | ||||
REF 13 | Optimization of an Imidazo[1,2-a]pyridine Series to Afford Highly Selective Type I1/2 Dual Mer/Axl Kinase Inhibitors with In Vivo Efficacy. J Med Chem. 2021 Sep 23;64(18):13524-13539. | ||||
REF 14 | Fragment-based lead discovery of indazole-based compounds as AXL kinase inhibitors. Bioorg Med Chem. 2021 Nov 1;49:116437. | ||||
REF 15 | Data-Driven Construction of Antitumor Agents with Controlled Polypharmacology. J Am Chem Soc. 2019 Oct 2;141(39):15700-15709. |
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