Target Binding Site Detail
| Target General Information | Top | ||||
|---|---|---|---|---|---|
| Target ID | T75596 | Target Info | |||
| Target Name | Methionine aminopeptidase 2 (METAP2) | ||||
| Synonyms | Peptidase M 2; P67eIF2; P67; MetAP 2; METAP2; Initiation factor 2 associated 67 kDa glycoprotein; (MetAP)-2 | ||||
| Target Type | Clinical trial Target | ||||
| Gene Name | METAP2 | ||||
| Biochemical Class | Peptidase | ||||
| UniProt ID | |||||
| Ligand General Information | Top | ||||
|---|---|---|---|---|---|
| Ligand Name | 2-Methyl-2-Propanol | Ligand Info | |||
| Canonical SMILES | CC(C)(C)O | ||||
| InChI | 1S/C4H10O/c1-4(2,3)5/h5H,1-3H3 | ||||
| InChIKey | DKGAVHZHDRPRBM-UHFFFAOYSA-N | ||||
| PubChem Compound ID | 6386 | ||||
| Drug Binding Sites of Target | Top | |||||
|---|---|---|---|---|---|---|
| PDB ID: 1QZY Human Methionine Aminopeptidase in complex with bengamide inhibitor LAF153 and cobalt | ||||||
| Method | X-ray diffraction | Resolution | 1.60 Å | Mutation | No | [1] |
| PDB Sequence |
KVQTDPPSVP
119 ICDLYPNGVF129 PKGQECEYPE153 EKKALDQASE163 EIWNDFREAA173 EAHRQVRKYV 183 MSWIKPGMTM193 IEICEKLEDC203 SRKLIKENGL213 NAGLAFPTGC223 SLNNCAAHYT 233 PNAGDTTVLQ243 YDDICKIDFG253 THISGRIIDC263 AFTVTFNPKY273 DTLLKAVKDA 283 TNTGIKCAGI293 DVRLCDVGEA303 IQEVMESYEV313 EIDGKTYQVK323 PIRNLNGHSI 333 GQYRIHAGKT343 VPIIKGGEAT353 RMEEGEVYAI363 ETFGSTGKGV373 VHDDMECSHY 383 MKNFDVGHVP393 IRLPRTKHLL403 NVINENFGTL413 AFCRRWLDRL423 GESKYLMALK 433 NLCDLGIVDP443 YPPLCDIKGS453 YTAQFEHTIL463 LRPTCKEVVS473 RGDDY |
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| PDB ID: 1BN5 HUMAN METHIONINE AMINOPEPTIDASE 2 | ||||||
| Method | X-ray diffraction | Resolution | 1.80 Å | Mutation | No | [2] |
| PDB Sequence |
KVQTDPPSVP
119 ICDLYPNGVF129 PKGQECEYPE153 EKKALDQASE163 EIWNDFREAA173 EAHRQVRKYV 183 MSWIKPGMTM193 IEICEKLEDC203 SRKLIKENGL213 NAGLAFPTGC223 SLNNCAAHYT 233 PNAGDTTVLQ243 YDDICKIDFG253 THISGRIIDC263 AFTVTFNPKY273 DTLLKAVKDA 283 TNTGIKCAGI293 DVRLCDVGEA303 IQEVMESYEV313 EIDGKTYQVK323 PIRNLNGHSI 333 GQYRIHAGKT343 VPIIKGGEAT353 RMEEGEVYAI363 ETFGSTGKGV373 VHDDMECSHY 383 MKNFDVGHVP393 IRLPRTKHLL403 NVINENFGTL413 AFCRRWLDRL423 GESKYLMALK 433 NLCDLGIVDP443 YPPLCDIKGS453 YTAQFEHTIL463 LRPTCKEVVS473 RGDDY |
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| PDB ID: 1KQ9 Human methionine aminopeptidase type II in complex with L-methionine | ||||||
| Method | X-ray diffraction | Resolution | 1.90 Å | Mutation | No | [3] |
| PDB Sequence |
QTPSVPICDL
123 YPNGVFPKGQ133 ECEYPKKALD159 QASEEIWNDF169 REAAEAHRQV179 RKYVMSWIKP 189 GMTMIEICEK199 LEDCSRKLIK209 ENGLNAGLAF219 PTGCSLNNCA229 AHYTPNAGDT 239 TVLQYDDICK249 IDFGTHISGR259 IIDCAFTVTF269 NPKYDTLLKA279 VKDATNTGIK 289 CAGIDVRLCD299 VGEAIQEVME309 SYEVEIDGKT319 YQVKPIRNLN329 GHSIGQYRIH 339 AGKTVPIIKG349 GEATRMEEGE359 VYAIETFGST369 GKGVVHDDME379 CSHYMKNFDV 389 GHVPIRLPRT399 KHLLNVINEN409 FGTLAFCRRW419 LDRLGESKYL429 MALKNLCDLG 439 IVDPYPPLCD449 IKGSYTAQFE459 HTILLRPTCK469 EVVSRGDDY
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| PDB ID: 1KQ0 Human methionine aminopeptidase type II in complex with D-methionine | ||||||
| Method | X-ray diffraction | Resolution | 2.00 Å | Mutation | No | [3] |
| PDB Sequence |
VQTDPPSVPI
120 CDLYPNGVFP130 KGQECEYPEE154 KKALDQASEE164 IWNDFREAAE174 AHRQVRKYVM 184 SWIKPGMTMI194 EICEKLEDCS204 RKLIKENGLN214 AGLAFPTGCS224 LNNCAAHYTP 234 NAGDTTVLQY244 DDICKIDFGT254 HISGRIIDCA264 FTVTFNPKYD274 TLLKAVKDAT 284 NTGIKCAGID294 VRLCDVGEAI304 QEVMESYEVE314 IDGKTYQVKP324 IRNLNGHSIG 334 QYRIHAGKTV344 PIIKGGEATR354 MEEGEVYAIE364 TFGSTGKGVV374 HDDMECSHYM 384 KNFDVGHVPI394 RLPRTKHLLN404 VINENFGTLA414 FCRRWLDRLG424 ESKYLMALKN 434 LCDLGIVDPY444 PPLCDIKGSY454 TAQFEHTILL464 RPTCKEVVSR474 GDDY |
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .TBU or .TBU2 or .TBU3 or :3TBU;style chemicals stick;color identity;select .A:184 or .A:265 or .A:266 or .A:281 or .A:458 or .A:477 or .A:478; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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| PDB ID: 6QEJ CRYSTAL STRUCTURE OF HUMAN METHIONINE AMINOPEPTIDASE-2 IN COMPLEX WITH AN INHIBITOR Thiophene-2-sulfonic acid (4-fluoro-benzyl)-(4H-[1,2,4]triazol-3-ylmethyl)-amide | ||||||
| Method | X-ray diffraction | Resolution | 1.62 Å | Mutation | No | [4] |
| PDB Sequence |
KVQTDPPSVP
119 ICDLYPNGVF129 PKGQECEYPP139 WRTSEEKKAL158 DQASEEIWND168 FREAAEAHRQ 178 VRKYVMSWIK188 PGMTMIEICE198 KLEDCSRKLI208 KENGLNAGLA218 FPTGCSLNNC 228 AAHYTPNAGD238 TTVLQYDDIC248 KIDFGTHISG258 RIIDCAFTVT268 FNPKYDTLLK 278 AVKDATNTGI288 KCAGIDVRLC298 DVGEAIQEVM308 ESYEVEIDGK318 TYQVKPIRNL 328 NGHSIGQYRI338 HAGKTVPIVK348 GGEATRMEEG358 EVYAIETFGS368 TGKGVVHDDM 378 ECSHYMKNFD388 VGHVPIRLPR398 TKHLLNVINE408 NFGTLAFCRR418 WLDRLGESKY 428 LMALKNLCDL438 GIVDPYPPLC448 DIKGSYTAQF458 EHTILLRPTC468 KEVVSRGDDY 478
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .TBU or .TBU2 or .TBU3 or :3TBU;style chemicals stick;color identity;select .A:188 or .A:189 or .A:244 or .A:269; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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| PDB ID: 5D6E Structure of human methionine aminopeptidase 2 with covalent spiroepoxytriazole inhibitor (-)-31b | ||||||
| Method | X-ray diffraction | Resolution | 1.49 Å | Mutation | No | [5] |
| PDB Sequence |
PKVQTDPPSV
118 PICDLYPNGV128 FPKGQECEYP138 PTQDGRTAAW148 RTTSEEKKAL158 DQASEEIWND 168 FREAAEAHRQ178 VRKYVMSWIK188 PGMTMIEICE198 KLEDCSRKLI208 KENGLNAGLA 218 FPTGCSLNNC228 AAHYTPNAGD238 TTVLQYDDIC248 KIDFGTHISG258 RIIDCAFTVT 268 FNPKYDTLLK278 AVKDATNTGI288 KCAGIDVRLC298 DVGEAIQEVM308 ESYEVEIDGK 318 TYQVKPIRNL328 NGHSIGQYRI338 HAGKTVPIVK348 GGEATRMEEG358 EVYAIETFGS 368 TGKGVVHDDM378 ECSHYMKNFD388 VGHVPIRLPR398 TKHLLNVINE408 NFGTLAFCRR 418 WLDRLGESKY428 LMALKNLCDL438 GIVDPYPPLC448 DIKGSYTAQF458 EHTILLRPTC 468 KEVVSRGDDY478
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .TBU or .TBU2 or .TBU3 or :3TBU;style chemicals stick;color identity;select .A:188 or .A:189 or .A:244 or .A:268 or .A:269 or .A:270 or .A:271 or .A:274; color #f3c393; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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| PDB ID: 5D6F Structure of human methionine aminopeptidase-2 complexed with spiroepoxytriazole inhibitor (+)-31b | ||||||
| Method | X-ray diffraction | Resolution | 1.55 Å | Mutation | No | [5] |
| PDB Sequence |
KVQTDPPSVP
119 ICDLYPNGVF129 PKGQECEYPP139 TQDGRTAAWR149 TTSEEKKALD159 QASEEIWNDF 169 REAAEAHRQV179 RKYVMSWIKP189 GMTMIEICEK199 LEDCSRKLIK209 ENGLNAGLAF 219 PTGCSLNNCA229 AHYTPNAGDT239 TVLQYDDICK249 IDFGTHISGR259 IIDCAFTVTF 269 NPKYDTLLKA279 VKDATNTGIK289 CAGIDVRLCD299 VGEAIQEVME309 SYEVEIDGKT 319 YQVKPIRNLN329 GHSIGQYRIH339 AGKTVPIVKG349 GEATRMEEGE359 VYAIETFGST 369 GKGVVHDDME379 CSHYMKNFDV389 GHVPIRLPRT399 KHLLNVINEN409 FGTLAFCRRW 419 LDRLGESKYL429 MALKNLCDLG439 IVDPYPPLCD449 IKGSYTAQFE459 HTILLRPTCK 469 EVVSRGDDY
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Click to Show 3D Structure of This Binding Site
set background white;style ions nothing; color 8e8e8e;style chemicals nothing; select .TBU or .TBU2 or .TBU3 or :3TBU;style chemicals stick;color identity;select .A:188 or .A:189 or .A:244 or .A:268 or .A:269 or .A:270 or .A:271 or .A:274; color #00ffc7; zoom selection;set surface opacity 0.5;set surface Van der Waals surface;set mode all
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| References | Top | ||||
|---|---|---|---|---|---|
| REF 1 | Proteomics-based target identification: bengamides as a new class of methionine aminopeptidase inhibitors. J Biol Chem. 2003 Dec 26;278(52):52964-71. | ||||
| REF 2 | Structure of human methionine aminopeptidase-2 complexed with fumagillin. Science. 1998 Nov 13;282(5392):1324-7. | ||||
| REF 3 | Human methionine aminopeptidase type 2 in complex with L- and D-methionine. Bioorg Med Chem Lett. 2006 May 15;16(10):2580-3. | ||||
| REF 4 | Discovery and Structure-Based Optimization of Next-Generation Reversible Methionine Aminopeptidase-2 (MetAP-2) Inhibitors. J Med Chem. 2019 May 23;62(10):5025-5039. | ||||
| REF 5 | Spiroepoxytriazoles Are Fumagillin-like Irreversible Inhibitors of MetAP2 with Potent Cellular Activity. ACS Chem Biol. 2016 Apr 15;11(4):1001-11. | ||||
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