Target Binding Site Detail

Content Navigation (  All   None )                                      
Target General Information
Ligand General Information
Drug Binding Sites of Target
References
Target General Information  Top
Target ID T94033 Target Info
Target Name Coagulation factor IIa (F2)
Synonyms Prothrombin; Coagulation factor II
Target Type Successful Target
Gene Name F2
Biochemical Class Peptidase
UniProt ID
THRB_HUMAN
Ligand General Information  Top
Ligand Name N(alpha)-((acetylthio)acetyl)-phenylalanyl-prolyl-arginine chloromethyl ketone Ligand Info
PubChem Substance ID 160654751
Drug Binding Sites of Target  Top
PDB ID: 1NU9      Staphylocoagulase-Prethrombin-2 complex
Method X-ray diffraction Resolution 2.20 Å Mutation No [1]
PDB Sequence
GEADCGLRPL
6
FEKKSLEDKT
14B
ERELLESYID
14L
GRIVEGSDAE
23
IGMSPWQVML
33

FRKSPQELLC
42
GASLISDRWV
52
LTAAHCLLYP
60B
PWDKNFTEND
63
LLVRIGKHSR
73

TRYERNIEKI
82
SMLEKIYIHP
92
RYNWRENLDR
101
DIALMKLKKP
111
VAFSDYIHPV
121

CLPDRETAAS
129B
LLQAGYKGRV
138
TGWGNLKETW
148
TANVGKGQPS
153
VLQVVNLPIV
163

ERPVCKDSTR
173
IRITDNMFCA
183
GYKPDEGKRG
188
DACEGDSGGP
198
FVMKSPFNNR
206

WYQMGIVSWG
216
EGCDRDGKYG
226
FYTHVFRLKK
236
WIQKVIDQFG
246
Residue
Distance (Å)
CYS42
4.319
HIS57
1.454
CYS58
4.163
TRP60D
3.389
TYR60A
3.588
TRP96
4.960
GLU97A
3.946
ASN98
3.837
LEU99
3.440
ILE174
3.541
ASP189
2.930
ALA190
3.326
CYS191
4.108
GLU192
4.366
Residue
Distance (Å)
GLY193
3.502
ASP194
3.820
SER195
1.390
VAL213
4.004
SER214
2.795
TRP215
2.813
GLY216
2.989
GLU217
3.913
GLY219
2.948
CYS220
3.905
ASP221A
4.814
GLY226
3.487
PHE227
4.637
PDB ID: 1NU7      Staphylocoagulase-Thrombin Complex
Method X-ray diffraction Resolution 2.20 Å Mutation No [1]
PDB Sequence
IVEGSDAEIG
25
MSPWQVMLFR
35
KSPQELLCGA
44
SLISDRWVLT
54
AAHCLLYPPW
60D

DKNFTENDLL
65
VRIGKHSRTR
75
YERNIEKISM
84
LEKIYIHPRY
94
NWRENLDRDI
103

ALMKLKKPVA
113
FSDYIHPVCL
123
PDRETAASLL
130
QAGYKGRVTG
140
WGNLKETWTA
149A

NVGKGQPSVL
155
QVVNLPIVER
165
PVCKDSTRIR
175
ITDNMFCAGY
184A
KPDEGKRGDA
190

CEGDSGGPFV
200
MKSPFNNRWY
208
QMGIVSWGEG
219
CDRDGKYGFY
228
THVFRLKKWI
238

QKVIDQFG
Residue
Distance (Å)
CYS42
4.321
HIS57
1.441
CYS58
4.145
TRP60D
3.361
TYR60A
3.803
GLU97A
4.025
ASN98
3.900
LEU99
3.326
ILE174
4.294
ASP189
2.777
ALA190
3.141
CYS191
4.041
GLU192
4.265
GLY193
3.402
Residue
Distance (Å)
ASP194
3.874
SER195
1.381
VAL213
4.029
SER214
2.855
TRP215
3.025
GLY216
2.853
GLU217
3.880
GLY219
2.971
CYS220
3.923
ASP221A
4.774
GLY226
3.627
PHE227
4.679
TYR228
4.899
References  Top
REF 1 Staphylocoagulase is a prototype for the mechanism of cofactor-induced zymogen activation. Nature. 2003 Oct 2;425(6957):535-9.

If You Find Any Error in Data or Bug in Web Service, Please Kindly Report It to Dr. Zhou and Dr. Zhang.